This is a preview instance. Do not rely on this data for real analyses.

PPD_005HXTA.1

USA/PPD_005HXTA.1/2023-10
J. Sereewit, E. B. Nunley, H. Xie, P. Roychoudhury & A. L. Greninger

University of Washington Dept. Laboratory Medicine and Pathology, Virology Division

Sample details

Collection date
2023-10
Sampling location
USA (Washington)
Isolate name
MpxV/human/USA/WA-UW-108756/2023

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-09 17:12insdc_ingest_userOPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
sh2017
Lineage
F.3

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2023-11-13
NCBI update date
2024-07-31
Raw reads accession

Host

Host

Submission details

Submission ID
OR766784.1
Submitting group
Date submitted
2026-06-09 17:00:47 UTC
Date released
2026-06-09 18:59:07 UTC
Earliest release date
2023-11-13

Alignment and QC

Length
197184 (100%)
# of SNPs
85
# of inserted bases
36
# of deleted bases
61
# of unknown bases
1

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions

  • G1262A
  • G2591A
  • G3111A
  • G3522A
  • C3818T
  • C7771T
  • G14000T
  • G15428A
  • A18769G
  • C20453T
  • G21723A
  • C23564T
  • G25661A
  • C25865T
  • T28175C
  • G30367A
  • G31053A
  • G34459A
Deletions

602-609, 133177-133186, 150586-150602, 179194-179211, 196610-196617
Insertions

ins_0:TTTTAGTACATTAATATTAT, ins_133102:TTT, ins_173317:ATAT, ins_192403:TA, ins_197209:TAAATWT

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG001

  • OPG001:S105L

OPG002

  • OPG002:S54F

OPG003

  • OPG003:D264N

OPG025

  • OPG025:A423D

OPG047

  • OPG047:R48C

OPG053

  • OPG053:P78S

OPG056

  • OPG056:E125K

OPG057

  • OPG057:E353K

OPG071

  • OPG071:L108F

OPG072

  • OPG072:D56N

OPG089

  • OPG089:S364L

OPG092

  • OPG092:D196N

OPG093

  • OPG093:S30L
  • OPG093:D88N

OPG094

  • OPG094:M142I

OPG098

  • OPG098:E162K

OPG105

  • OPG105:S734L

OPG109

  • OPG109:H740Y

OPG118

  • OPG118:K606E

OPG136

  • OPG136:D98N

OPG139

  • OPG139:A17T

OPG141

  • OPG141:S51L

OPG145

  • OPG145:E62K
  • OPG145:R243Q
  • OPG145:E435K

OPG150

  • OPG150:S307L

OPG176

  • OPG176:H221Y

OPG193

  • OPG193:L263F

OPG209

  • OPG209:S34L

OPG210

  • OPG210:D209N
  • OPG210:P722S
  • OPG210:M1741I
Deletions
N/A
Insertions
N/A

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