This is a preview instance. Do not rely on this data for real analyses.

PPD_003UT1D.1

France/PPD_003UT1D.1/2024
M. Gasparine & A. Falchi

University of Corsica, Unite des Virus Emergents

Sample details

Collection date
2024
Sampling location
France
Isolate name
ECH

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-09 16:59insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession L
NCBI release date
2025-08-10

Host

Host

Submission details

Submission ID
PV976880.1.L
Submitting group
Date submitted
2026-06-09 16:58:33 UTC
Date released
2026-06-09 17:05:36 UTC
Earliest release date
2025-08-10

Alignment and QC

Length L
11837 (90.2%)
# of SNPs L
837
# of deleted bases L
1
# of unknown bases L
914
# of frame shifts L
1
Frame shifts L
RdRp:1028-3946(nt:3157-11914)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G93A
  • T106C
  • C117T
  • G119C
  • A123G
  • A126G
  • G130C
  • T151C
  • C153G
  • T254A
  • C256T
  • A257C
  • G272A
  • T292C
  • A298G
  • C313T
  • A314G
  • G323A
Deletions

L

3156
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:A14V
  • RdRp:G15R
  • RdRp:Q16R
  • RdRp:Y17C
  • RdRp:S26C
  • RdRp:Y60N
  • RdRp:I61L
  • RdRp:E66K
  • RdRp:R80G
  • RdRp:G83S
  • RdRp:L103I
  • RdRp:S106F
  • RdRp:T115A
  • RdRp:I116V
  • RdRp:I118Y
  • RdRp:E128G
  • RdRp:F133L
Deletions
N/A
Insertions
N/A

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