This is a preview instance. Do not rely on this data for real analyses.

PPD_003UT0F.1

France/PPD_003UT0F.1/2024
M. Gasparine & A. Falchi

University of Corsica, Unite des Virus Emergents

Sample details

Collection date
2024
Sampling location
France
Isolate name
3154

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-09 16:59insdc_ingest_userOPEN
Data use terms URL

Lineage

Segment S Lineage
III

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2025-08-10

Host

Host

Submission details

Submission ID
PV976879.1.L/PV976878.1.M/PV976895.1.S
Submitting group
Date submitted
2026-06-09 16:58:33 UTC
Date released
2026-06-09 17:05:36 UTC
Earliest release date
2025-08-10

Alignment and QC

Length M
5366 (100%)
# of SNPs M
167
Length L
12157 (100%)
# of SNPs L
290
# of inserted bases L
52
Length S
1673 (100%)
# of SNPs S
131
# of inserted bases S
1

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • C64T
  • T65C
  • T70C
  • G93A
  • C100T
  • T151C
  • T160C
  • T254A
  • A298G
  • C313T
  • T340C
  • C427T
  • T550G
  • G553A
  • A563G
  • C568T
  • G619A
  • A677G

M

  • C82T
  • G124A
  • T137C
  • G175T
  • G207A
  • C217T
  • C229A
  • T259C
  • C320T
  • C356T
  • T360C
  • A364G
  • A377G
  • T385C
  • C404T
  • T406C
  • C410T
  • G414A

S

  • G47C
  • A50G
  • G54A
  • G67A
  • G99A
  • G100A
  • C178G
  • T181C
  • C187T
  • G189A
  • T199C
  • G202A
  • T220C
  • G229A
  • C235T
  • A247G
  • G271A
  • T274C
Deletions
N/A
Insertions

L

ins_12097:CTCATTTCAGCTTCATCGTCATCGTTATTATTTTGGGGTGTGGGGGGAACGA

S

ins_1581:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:C11Y
  • GPC:R28I
  • GPC:G39S
  • GPC:P42L
  • GPC:P46Q
  • GPC:L56P
  • GPC:S90P
  • GPC:E91G
  • GPC:V98A
  • GPC:L105S
  • GPC:G108S
  • GPC:P112T
  • GPC:S113G
  • GPC:G119D
  • GPC:A122T
  • GPC:P123L
  • GPC:N131S
  • GPC:V146M

NP

  • NP:R15K
  • NP:R45K
  • NP:K91R
  • NP:T124A
  • NP:G125N
  • NP:L179Q
  • NP:H195R
  • NP:I246V
  • NP:R270G
  • NP:S301G
  • NP:K428R
  • NP:T429I
  • NP:V436I
  • NP:S451P

RdRp

  • RdRp:S6N
  • RdRp:Y60N
  • RdRp:T163A
  • RdRp:S201G
  • RdRp:I505T
  • RdRp:T767A
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:A1038T
  • RdRp:G1047E
  • RdRp:R1126H
  • RdRp:T1182I
  • RdRp:V1228I
  • RdRp:N1367D
  • RdRp:V1496I
  • RdRp:M1647L
  • RdRp:P1660T
Deletions
N/A
Insertions
N/A

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