PPD_0000L54.1

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Argentina/PPD_0000L54.1/2019

D. O. Alonso, S. D. Kehl, R. M. Coelho, N. Periolo, J. Campos, T. Poklepovich Caride, U. Perez-Sautu, M. Sanchez-Lockhart, G. Palacios, C. M. Bellomo & V. P. Martinez

Malbran Institute, Virology

Sample details

Collection date

2019

Sampling location

Argentina (Entre Rios)

Isolate name

ER19-SP1693

Data use terms

Changed	User	Data use terms
2026-06-09 16:51	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession L

PP151172.1

INSDC accession M

OR987856.1

INSDC accession S

OR908896.1

NCBI release date

2024-09-06

Host

human (Homo sapiens)

Submission details

Submission ID

PP151172.1.L/OR987856.1.M/OR908896.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-06-09 16:50:59 UTC

Date released

2026-06-09 16:53:22 UTC

Earliest release date

2024-09-06

Alignment and QC

Length L

6563 (100%)

# of SNPs L

1351

# of inserted bases L

# of deleted bases L

Length M

3632 (99.4%)

# of SNPs M

770

# of inserted bases M

# of deleted bases M

Length S

1925 (99.3%)

# of SNPs S

316

# of inserted bases S

# of deleted bases S

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

G6T
T7A
T47C
A65G
C74G
C75T
T77G
T83A
C88G
G89T
T91C
C107T
C114T
C117T
G119A
T122C
C131T
C137A

M

A32C
T34G
A37G
G38A
G43T
G45T
T46A
T47G
T48A
A51G
C67T
G70A
T75C
C76T
T78G
A81G
A89C
G93T

S

G28A
G63A
G66A
C72T
G120A
G129A
G133A
A135G
C156G
T202C
A219G
T225C
G231A
T244C
T262C
A321G
T327C
G339C

Deletions

L

6533

M

3473, 3474, 3492-3497, 3511-3514, 3521, 3522, 3528, 3529, 3549, 3559-3565

S

1335, 1398-1400, 1500, 1632, 1633, 1639, 1650, 1684-1688, 1745, 1746

Insertions

L

ins_6497:A, ins_6528:A, ins_6550:C, ins_6562:A

M

ins_50:A, ins_3477:ATGTA

S

ins_1343:TAAGAGC, ins_1351:CCAT, ins_1355:GCCAGAACTAGTCAATATCTG, ins_1358:GTTATGTTGGTTGGGTGG, ins_1383:T, ins_1451:A, ins_1483:C, ins_1537:TTAAT, ins_1545:CAT, ins_1577:ATAGA, ins_1583:AA, ins_1595:ATAGA, ins_1660:AA, ins_1666:GTTAATCA, ins_1756:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references