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PPD_0000KSW.1
Download
Download FASTA
Download metadata TSV
Argentina/PPD_0000KSW.1/2011
D. O. Alonso,
S. D. Kehl,
R. M. Coelho,
N. Periolo,
J. Campos,
T. Poklepovich Caride,
U. Perez-Sautu,
M. Sanchez-Lockhart,
G. Palacios,
C. M. Bellomo &
V. P. Martinez
Malbran Institute, Virology
Sample details
Collection date
2011
Sampling location
Argentina (Buenos Aires)
Isolate name
BA11-MH1249
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-09 16:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession M
PP003839.1
INSDC accession S
OR908894.1
NCBI release date
2024-09-06
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PP003839.1.M/OR908894.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-09 16:50:59 UTC
Date released
2026-06-09 16:53:22 UTC
Earliest release date
2024-09-06
Alignment and QC
Length S
1843 (97%)
# of SNPs S
310
# of inserted bases S
48
# of deleted bases S
19
Length M
3501 (79%)
# of SNPs M
600
# of inserted bases M
4
# of deleted bases M
24
# of unknown bases M
622
Nucleotide mutations
Mutations called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
M
C
67
T
G
70
A
T
75
C
C
76
T
T
78
G
A
89
C
G
93
A
C
94
T
C
111
T
G
114
A
T
120
C
T
123
C
G
126
A
T
129
C
A
131
G
A
132
G
C
147
T
T
156
C
Show more
S
G
63
A
G
66
A
C
72
T
T
117
C
G
120
A
G
129
A
G
133
A
A
135
G
C
156
G
T
225
C
A
234
G
A
240
C
T
262
C
C
310
T
A
312
G
T
327
A
C
328
T
A
331
C
Show more
Deletions
M
3476-3488, 3509-3516, 3548, 3566, 3582
S
1400-1403, 1473, 1500, 1527-1532, 1633-1635, 1661, 1717, 1745, 1746
Insertions
M
ins_3498:CC, ins_3560:AA
S
ins_1336:CAAC, ins_1341:GGTGCT, ins_1353:TAGGTTG, ins_1383:T, ins_1451:A, ins_1483:C, ins_1553:GAAT, ins_1568:AGCAT, ins_1587:GTATAGGTTTTGATTAGG, ins_1628:A
Amino acid substitutions
Substitutions called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
GPC
GPC:
V
7
I
GPC:
Y
13
S
GPC:
K
27
R
GPC:
S
51
P
GPC:
A
54
T
GPC:
I
58
L
GPC:
A
74
T
GPC:
F
78
Y
GPC:
I
114
V
GPC:
P
117
S
GPC:
V
126
I
GPC:
L
153
A
GPC:
S
168
N
GPC:
I
185
V
GPC:
D
206
E
GPC:
T
207
M
GPC:
I
260
H
GPC:
L
277
I
Show more
Gc
Gc:
M
5
L
Gc:
I
19
V
Gc:
S
101
A
Gc:
I
210
V
Gc:
P
231
T
Gc:
E
282
D
Gc:
T
287
A
Gc:
M
355
I
Gc:
L
363
M
Gc:
T
372
S
Gc:
L
408
V
Gc:
I
466
V
Gc:
L
469
F
Gc:
M
473
L
Gc:
V
476
I
Gn
Gn:
V
7
I
Gn:
Y
13
S
Gn:
K
27
R
Gn:
S
51
P
Gn:
A
54
T
Gn:
I
58
L
Gn:
A
74
T
Gn:
F
78
Y
Gn:
I
114
V
Gn:
P
117
S
Gn:
V
126
I
Gn:
L
153
A
Gn:
S
168
N
Gn:
I
185
V
Gn:
D
206
E
Gn:
T
207
M
Gn:
I
260
H
Gn:
L
277
I
Show more
N
N:
A
31
T
N:
D
38
E
N:
K
120
R
N:
G
226
S
N:
D
234
E
N:
E
238
D
N:
V
252
A
N:
A
253
P
N:
S
259
A
N:
M
263
A
N:
I
281
V
N:
E
297
D
N:
S
332
A
NSs
NSs:
R
3
K
NSs:
Q
5
R
NSs:
T
12
R
NSs:
L
35
S
NSs:
N
38
S
NSs:
Q
40
P
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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