PPD_0000KQ0.1

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Argentina/PPD_0000KQ0.1/2018

D. O. Alonso, S. D. Kehl, R. M. Coelho, N. Periolo, J. Campos, T. Poklepovich Caride, U. Perez-Sautu, M. Sanchez-Lockhart, G. Palacios, C. M. Bellomo & V. P. Martinez

Malbran Institute, Virology

Sample details

Collection date

2018

Sampling location

Argentina (Buenos Aires)

Isolate name

BA18-LD1633

Data use terms

Changed	User	Data use terms
2026-06-09 16:51	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession L

PP003837.1

INSDC accession M

PP151164.1

INSDC accession S

OR908898.1

NCBI release date

2024-09-06

Host

human (Homo sapiens)

Submission details

Submission ID

PP003837.1.L/PP151164.1.M/OR908898.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-06-09 16:50:59 UTC

Date released

2026-06-09 16:53:22 UTC

Earliest release date

2024-09-06

Alignment and QC

Length L

6587 (99.9%)

# of SNPs L

1334

# of inserted bases L

# of deleted bases L

Length M

3613 (98.9%)

# of SNPs M

774

# of inserted bases M

# of deleted bases M

Length S

1889 (97.3%)

# of SNPs S

314

# of inserted bases S

# of deleted bases S

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

G31A
T47C
G62A
A65G
C74G
C75T
T77G
T83A
C88G
G89T
T91C
A92T
A101G
A104G
C107T
T113C
C117T
T122C

M

A32C
T34G
A37G
G38A
G43T
G45T
T46A
T47G
T48A
A51G
C67T
G70A
T75C
C76T
T78G
A89C
G93T
C94T

S

G63A
G66A
C72T
G120A
G129A
G133A
A135G
C156G
T202C
A219G
T225C
G231A
A240C
T244C
T262C
T306C
A321G
T327C

Deletions

L

6533

M

3475-3483, 3500, 3501, 3518, 3519, 3528, 3529, 3549, 3559-3565

S

1398-1400, 1500, 1545, 1632, 1633, 1639, 1650, 1684-1688, 1745, 1746

Insertions

L

ins_6497:G, ins_6528:A, ins_6549:T, ins_6553:CTGTGTCCAC, ins_6562:AGTGGATTTTATATCTT

M

ins_50:A, ins_3514:ATAG

S

ins_1334:GA, ins_1337:AC, ins_1341:GAGCC, ins_1345:C, ins_1347:CC, ins_1349:AAGAGCCAGAACTAGTCAATATC, ins_1357:ATGTTGGTTGGGTG, ins_1383:T, ins_1451:A, ins_1483:C, ins_1525:CTGGGGTT, ins_1530:T, ins_1577:ATAGA, ins_1583:AA, ins_1595:ATAGA, ins_1660:AA, ins_1666:GTTAATCA, ins_1756:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references