This is a preview instance. Do not rely on this data for real analyses.

PPD_0000KJC.1

Argentina/PPD_0000KJC.1/2011
D. O. Alonso, S. D. Kehl, R. M. Coelho, N. Periolo, J. Campos, T. Poklepovich Caride, U. Perez-Sautu, M. Sanchez-Lockhart, G. Palacios, C. M. Bellomo & V. P. Martinez

Malbran Institute, Virology

Sample details

Collection date
2011
Sampling location
Argentina (Buenos Aires)
Isolate name
BA11-IM1254

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-09 16:51insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession S
NCBI release date
2024-09-06

Host

Host

Submission details

Submission ID
OR908895.1.S
Submitting group
Date submitted
2026-06-09 16:50:59 UTC
Date released
2026-06-09 16:53:22 UTC
Earliest release date
2024-09-06

Alignment and QC

Length S
1844 (97%)
# of SNPs S
311
# of inserted bases S
48
# of deleted bases S
19

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

S

  • G33T
  • G63A
  • G66A
  • C72T
  • T117C
  • G120A
  • G129A
  • G133A
  • A135G
  • C156G
  • T225C
  • A234G
  • A240C
  • T262C
  • C310T
  • A312G
  • T327A
  • C328T
Deletions

S

1400-1403, 1473, 1500, 1527-1532, 1633-1635, 1661, 1717, 1745, 1746
Insertions

S

ins_1336:CAAC, ins_1341:GGTGCT, ins_1353:TAGGTTG, ins_1383:T, ins_1451:A, ins_1483:C, ins_1553:GAAT, ins_1568:AGCAT, ins_1587:GTATAGGTTTTGATTAGG, ins_1628:A

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

N

  • N:A31T
  • N:D38E
  • N:K120R
  • N:G226S
  • N:D234E
  • N:E238D
  • N:V252A
  • N:A253P
  • N:S259A
  • N:M263A
  • N:I281V
  • N:E297D
  • N:S332A

NSs

  • NSs:R3K
  • NSs:Q5R
  • NSs:T12R
  • NSs:L35S
  • NSs:N38S
  • NSs:Q40P
Deletions
N/A
Insertions
N/A

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