This is a preview instance. Do not rely on this data for real analyses.

PPD_0000FHJ.1

Peru/PPD_0000FHJ.1/2010
H. Razuri, R. Tokarz, B. M. Ghersi, G. Salmon-Mulanovich, M. C. Guezala, C. Albujar, A. P. Mendoza, Y. O. Tinoco, C. Cruz, M. Silva, A. Vasquez, V. Pacheco, U. Stroher, L. W. Guerrero, D. Cannon, S. T. Nichol, D. L. Hirschberg, W. I. Lipkin, D. G. Bausch & J. M. Montgomery

Columbia University, Center for Infection and Immunity

Sample details

Collection date
2010
Sampling location
Peru
Isolate name
769

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-09 16:51insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2014-03-16

Host

Host

Submission details

Submission ID
KF581136.1.L/KF581135.1.M/KF581134.1.S
Submitting group
Date submitted
2026-06-09 16:50:59 UTC
Date released
2026-06-09 16:53:22 UTC
Earliest release date
2014-03-16

Alignment and QC

Length L
572 (8.72%)
# of SNPs L
129
Length S
1068 (57.1%)
# of SNPs S
178
Length M
1673 (45.5%)
# of SNPs M
326
# of ambiguous bases M
1

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

  • T4259A
  • A4265G
  • A4268T
  • C4289T
  • C4290A
  • G4292A
  • A4294T
  • T4301G
  • A4313T
  • C4316T
  • G4319A
  • A4325T
  • C4326T
  • T4328A
  • T4331G
  • T4337A
  • G4352T
  • G4354A

M

  • T1776C
  • C1779T
  • A1788G
  • A1794G
  • G1795T
  • T1800A
  • C1809A
  • T1810C
  • G1812T
  • C1818T
  • T1825G
  • C1827T
  • A1828G
  • A1836G
  • G1839A
  • A1866G
  • G1869A
  • A1872C

S

  • G66A
  • A90G
  • A111G
  • G120A
  • C172T
  • A183G
  • C184A
  • C188G
  • T202C
  • A219G
  • A222G
  • T225C
  • G231A
  • T244A
  • T262C
  • T306C
  • A312G
  • A321G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

GPC

  • GPC:I579M
  • GPC:A582S
  • GPC:S592A
  • GPC:I593V
  • GPC:K610R
  • GPC:K615R
  • GPC:L638I
  • GPC:L639M
  • GPC:C642L
  • GPC:I644L
  • GPC:V645I
  • GPC:I646V
  • GPC:A649V
  • GPC:M656L
  • GPC:S681A
  • GPC:K693R
  • GPC:K700R
  • GPC:S752A

Gc

  • Gc:M5L
  • Gc:S30A
  • Gc:K42R
  • Gc:K49R
  • Gc:S101A
  • Gc:I159V
  • Gc:V181I
  • Gc:V186I
  • Gc:P231T
  • Gc:I262V
  • Gc:E282D
  • Gc:T287A
  • Gc:N288T
  • Gc:I293V
  • Gc:T345V
  • Gc:S353T
  • Gc:M355I
  • Gc:T372A

Gn

  • Gn:I579M
  • Gn:A582S
  • Gn:S592A
  • Gn:I593V
  • Gn:K610R
  • Gn:K615R
  • Gn:L638I
  • Gn:L639M
  • Gn:C642L
  • Gn:I644L
  • Gn:V645I
  • Gn:I646V
  • Gn:A649V

N

  • N:A49G
  • N:L68M
  • N:K120R
  • N:G226S
  • N:D234E
  • N:E238D
  • N:A241S
  • N:A242E
  • N:V252S
  • N:A253P
  • N:S259A
  • N:M263A
  • N:E274D
  • N:I281V
  • N:E297D
  • N:S332A

NSs

  • NSs:D21G
  • NSs:Q23E
  • NSs:E33G
  • NSs:N34S
  • NSs:L35S
  • NSs:G37D
  • NSs:I62T

RdRp

  • RdRp:Y1420F
  • RdRp:S1440N
  • RdRp:Q1442N
  • RdRp:L1514M
  • RdRp:V1519I
  • RdRp:A1526S
  • RdRp:E1555D
  • RdRp:T1593A
Deletions
N/A
Insertions
N/A

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