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PPD_0000DQ6.1

Uruguay/PPD_0000DQ6.1/2005-03
A. Delfraro, L. Tome, G. D'Elia, M. Clara, F. Achaval, J. C. Russi, J. R. Rodonz, J. Russi & J. Arbiza

Universidad de la Republica, Facultad de Ciencias, Seccion Virologia

Sample details

Collection date
2005-03
Sampling location
Uruguay
Isolate name
PB 1002

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-09 16:51insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession M
INSDC accession S
NCBI release date
2008-09-10

Host

Host

Submission details

Submission ID
EU564725.1.M/EU564723.1.S
Submitting group
Date submitted
2026-06-09 16:50:59 UTC
Date released
2026-06-09 16:53:22 UTC
Earliest release date
2008-09-10

Alignment and QC

Length M
625 (17%)
# of SNPs M
131
Length S
388 (20.7%)
# of SNPs S
82

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

M

  • C2649T
  • A2652C
  • T2679C
  • T2682C
  • C2685A
  • T2694A
  • C2695A
  • C2697T
  • A2698G
  • G2699C
  • T2700A
  • G2709A
  • T2712C
  • C2721T
  • T2724A
  • A2727T
  • A2734C
  • G2736T

S

  • A312G
  • A321G
  • A324T
  • T327A
  • C328T
  • G330A
  • A331C
  • A333G
  • G339C
  • C345T
  • C346A
  • G348C
  • T354C
  • T357C
  • T358C
  • G369A
  • G378C
  • A384C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

GPC

  • GPC:P882T
  • GPC:S883A
  • GPC:I913V
  • GPC:E933D
  • GPC:A980T
  • GPC:T996G
  • GPC:M1006I
  • GPC:T1023A
  • GPC:T1051S
  • GPC:S1055A
  • GPC:E1056D
  • GPC:L1059I
  • GPC:E1066V

Gc

  • Gc:P231T
  • Gc:S232A
  • Gc:I262V
  • Gc:E282D
  • Gc:A329T
  • Gc:T345G
  • Gc:M355I
  • Gc:T372A
  • Gc:T400S
  • Gc:S404A
  • Gc:E405D
  • Gc:L408I
  • Gc:E415V

N

  • N:L102I
  • N:S106P
  • N:F165Y
Deletions
N/A
Insertions
N/A

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