This is a preview instance. Do not rely on this data for real analyses.

PPD_0000A5E.1

Brazil/PPD_0000A5E.1/2004-08
C. Ramsden, F. L. Melo, L. M. Figueiredo, E. C. Holmes, P. M. Zanotto, C. T. Braconi & P. M. A. Zanotto

LEMB, Institute of Biomedical Science, Dept. Microbiology

Sample details

Collection date
2004-08
Sampling location
Brazil
Isolate name
SC_SP_H26/1867

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-09 16:51insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession M
INSDC accession S
NCBI release date
2007-12-09

Submission details

Submission ID
EU170170.1.M/EU170209.1.S
Submitting group
Date submitted
2026-06-09 16:50:59 UTC
Date released
2026-06-09 16:53:22 UTC
Earliest release date
2007-12-09

Alignment and QC

Length M
310 (8.44%)
# of SNPs M
75
Length S
261 (13.9%)
# of SNPs S
40

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

M

  • C1995A
  • C1997T
  • G2002A
  • A2004T
  • G2007A
  • A2013T
  • A2016T
  • A2017C
  • G2019T
  • G2022A
  • T2023G
  • A2025T
  • C2028A
  • G2040T
  • T2043A
  • T2049A
  • T2055A
  • G2058A

S

  • C292A
  • T306C
  • A318G
  • T327A
  • C345G
  • T354C
  • T357C
  • T358C
  • A360T
  • T363C
  • T367C
  • G369T
  • A375G
  • G378A
  • A384T
  • T390G
  • T393A
  • T396C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

GPC

  • GPC:A649V
  • GPC:A651T
  • GPC:M656L
  • GPC:S658A
  • GPC:I670L
  • GPC:E701D
  • GPC:V714I
  • GPC:P721S
  • GPC:T729V
  • GPC:F730L

Gc

  • Gc:M5L
  • Gc:S7A
  • Gc:I19L
  • Gc:E50D
  • Gc:V63I
  • Gc:P70S
  • Gc:T78V
  • Gc:F79L

Gn

  • Gn:A649V
  • Gn:A651T

N

  • N:L84I
  • N:S106P

NSs

  • NSs:I62T
Deletions
N/A
Insertions
N/A

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